io.load_label_roi
io.load_label_roi(roi_url, roi_idx, roi=0, name='nuclei', channel=0, timepoint=0)
Load the label array of the selected ROI
Parameters
| Name | Type | Description | Default |
|---|---|---|---|
roi_url |
Path | zarr url to the selected ROI | required |
roi_idx |
pd.DataFrame | Dataframe with the x/y/z start and end indices | required |
roi |
int | ROI index in the selected well | 0 |
name |
str | Name of the labels folder | 'nuclei' |
channel |
int | Channel index | 0 |
timepoint |
int | Timepoint index | 0 |
Returns
| Type | Description |
|---|---|
| np.ndarray | Numpy array with the ROI labels |