tasks.condition_registration

tasks.condition_registration

Functions

Name	Description
condition_registration	Register the experimental (drug layout) in the OME-ZARR.

condition_registration

tasks.condition_registration.condition_registration(zarr_url, layout_path, condition_name='condition', overwrite=False)

Register the experimental (drug layout) in the OME-ZARR. The table should contain at least the columns row and col identifying the well. It can have an arbitrary number of additional metadata columns (e.g. drug, concentration, medium, sample). Drug combinations can be specified by two entries pointing to the same row / col

Parameters

Name	Type	Description	Default
zarr_url	str	Path to an OME-ZARR Image	required
layout_path	str	Path to a drug layout file (.csv) with at least the columns: row, col	required
condition_name	str	Name of the condition table	'condition'
overwrite	bool	Whether to overwrite any existing OME-ZARR condition table	False